Migraine is a disorder of the brain's pain-processing system, not a disorder of blood vessels or sinuses or the neck. It begins when trigeminal nerve endings around cranial blood vessels release neuropeptides — particularly calcitonin gene-related peptide (CGRP), substance P, and neurokinin A. These peptides dilate vessels, sensitize nerve endings, and trigger a self-amplifying inflammatory response that produces the throbbing, pulsating pain characteristic of a migraine attack.
The signal then travels centrally through the trigeminal ganglion to the trigeminal nucleus caudalis in the brainstem, and from there to the thalamus and cortex. This central sensitization explains why migraine pain worsens with movement, light, and sound — the brain becomes hyperexcitable, and normal sensory input becomes painful. That process is what makes the headache phase so disabling, and why most patients need to lie down in a dark, quiet room.
Cortical spreading depression (CSD) is the mechanism underlying aura. A wave of neuronal depolarization spreads slowly across the cortex at about 3 to 5 millimeters per minute, followed by a period of suppressed activity. The rate and direction of this wave match the classic visual aura symptoms — the scintillating scotoma that expands across the visual field over 20 to 60 minutes. CSD can trigger trigeminal activation on its own, which is why some patients get headaches after aura without an obvious external trigger.
What makes a brain susceptible is partly genetic. Over 40 genetic loci have been associated with migraine, and rare familial forms (familial hemiplegic migraine) involve mutations in ion channel genes. In the common forms, the inheritance is polygenic, and the trait is best understood as a lower threshold for the trigeminovascular system to activate. That threshold shifts with hormonal state, sleep, stress, and other triggers — which is why the same person may have attacks on some days and not others.